NCBI Blast databases를 다운로드 할 수 있는 곳. →  http://www.ncbi.nlm.nih.gov/BLAST/download.shtml

NCBI database 설명서 → readme.html

NCBI에서 database 다운 받는 방법

NCBI taxonomy browser site

EBML-EBI web site / fasta database ftp

Basic Regular Expression(BRE) syntax reference , 한국어 설명

IPI database download → http://www.ebi.ac.uk/IPI/IPIhelp.html

GI Cross-Reference file format → http://www.ebi.ac.uk/IPI/Gi2IpiFormat.html


A SEquence Globally Unique IDentifier (SEGUID) Proteome Database

      Description
Expasy main site link  
Uniprot knowledgebase search link text, sequence blast search 가능
NCBI protein search link protein description text search 가능
NCBI protein Blast search link protein blast search 가능
IPI search link database identifier or protein name search 가능
Uniprot home link Uniprot(swissprot+TrEMBL+) 홈페이지



IST TPP website → home → http://www.proteomecenter.org/
  사용자 discussion → http://groups.google.com/group/spctools-discuss
  공고 → http://groups.google.com/group/spctools-announce
  Manual → http://www.insilicos.com/spctools/spctools
http://www.insilicos.com/spctools/spctools/Tutorial
  wiki → http://tools.proteomecenter.org/wiki/index.php?title=Main_Page


<convert to mzXML>

http://sashimi.sourceforge.net/software_glossolalia.html


<Nano-LC chromeleon setting>

Server configuration :
setting detail
   
IQReport.log :
Look at it!
   
CmSetup.log :
Look at it!


<Probot μ-carrier setting>

Setting 값 설명 :
Doc
   
Setting file :
zip
   
plate 위치 변화 계산
xls




<GO annotator>

ReBIL Project : Web-based GO annotator tool freely! click here

CPAS : Local-operated tool. click here       ;       about protein annotation

BiNGO

http://www.geneontology.org/

http://www.ebi.ac.uk/GOA/

http://www.ebi.ac.uk/ego/

GO slim

GO perl

GOminder

WEGO

GO slim structure

Integr8 : Access to complete genomes and proteomes



<프로테오믹스 관련 실험실 >

http://proteomics.kist.re.kr

한국기초과학지원연구원

연세프로테옴 센터


<Sequest data 처리>

dta 및 out 확장자 파일의 처리




<bioperl : wiki type of website providing perl script relating to bioinformatics>

go there~

bioperl script collection


<Perl>

Download perl

relating site 1

relating site 2

relating site 3

CPAN



<bioinformatics tool>

http://www.proteomecommons.org/



<Bioinformatics 관련 사이트>

http://www.bioinformatics.pe.kr/

European Bioinformatics Institute

바이오 해커스


<Bioinformatics tool>

Bioinformatics Resource Manager


<Proteomics Journal>

Journal of Proteome

Molecular & Cellular Proteomics / 제출할 그림 가이드라인 / 파워포인트에서 해상도 높여 그림 출력
PUBLICATION GUIDELINES FOR THE ANALYSIS AND DOCUMENTATION OF PEPTIDE AND PROTEIN IDENTIFICATIONS
Instructions/Explanations for Complying with the Protein Identification Guidelines: A Tutorial
The Minimum Information About a Proteomics Experiment (MIAPE) (PDF 3705K)

Journal impact factor 확인


<RPM & RCF calculator>

RCF = 1.118 × 10^-6 × radius × RPM^2

calculator


<HUPO ppp project>

EBI pride

http://www.bioinformatics.med.umich.edu/hupo/ppp